Cell Physiology, Bio 4441/5441 Spring 2010

11 - 12:20 T-H, SUPP 116

Visit this page frequently for schedule updates!
Always hit "reload." Last updated Wednesday, April 14, 2010
.

The textbook is "Molecular Biology of the Cell", 5th edition, Alberts et al.The companion Problems Book is required - students will need this for the laboratory portion of the course. You are strongly encouraged to read the whole lecture text book, especially Chapter 1 and the first part of Chapter 2 as review before the first class.


NOTE - THIS SYLLABUS IS (always) UNDER CONSTRUCTION. CHECK BACK FREQUENTLY!

Dates
Note - all dates, except exam dates, are approximate.
Lecture Topics (Lecture begins Jan. 20). Copies of the lecture illustrations are available as PDF files in the TRACS resources folder for this course. Many students find it useful to print these and bring them to lecture for note-taking. Don't print these all at once, as new material may be added during the course. Lecture Text References
Read C1 before class begins.
Laboratory
See below for the lab syllabus.
Jan. 19 1. Catalysis and Energy
( including lipid metabolism, heart disease)
C2, C3 p157-166,C14 Labs begin Monday, Jan. 25 - SUPP 435
2. Proteins C3 Jan. 25. Enzyme Kinetics
Feb. 16 Exam 1
Feb. 18 3. DNA, Chromosomes, Genomes C4 Protein Analysis by SDS-PAGE and Western Blotting
4. DNA replication in Chromosomes C5 Microscopy
Mar. 7 - 14 Spring Break BONUS for those actually reading the syllabus - there will be a "pop" quiz on Thursday before spring break (March 4). 10 points for showing up and answering a simple question
March 16 5. Gene Expression and Regulation C6, C7 Cell Culture and Immunocytochemistry
6. Transport, Electrical Properties of Cellular Membranes. C10, C11
March 23 Exam 2
March - 25 7. Organelles, Vesicles, Protein Sorting C12, C13 Genomics and Bioinformatics
March last day to drop - see CATS
April - May 8. Chemical Cell Signaling C15
9. Cytoskeleton, Junctions, Extracellular Matrix C16, C19
April 22 Exam 3
April 25 - May 4 10. Cell Cycle, Cell Division, Apoptosis, Cancer C17, C18, C20
11. Meiosis, Gametogenesis C21, 22, 23
12. , Fertilization, Early Development
Final Exam Thursday, May 6 11 - 1:30 116 SUPP

Professor: Dr. Joseph R. Koke - Instructional Assistants: Mary Dobson, Katherine Cummings, and Lorena Rangel. They will provide office hour information at the first lab meeting.

Office hours: Dr. Koke: 9 - 10:30, TTh, room 440, Supple Science Building.

Electronic Access. Make sure you have an Texas State Internet Account and use it for all correspondence related to this course. Important course material and messages may be distributed by e-mail and/or TRACS. You must use your Texas State account as proof of identity to participate, and e-mail messages regarding this course originating from non-Texas State accounts will be ignored. Be sure to use a salutation (like "Dear Dr. Koke") and "sign" your message with your real name and Texas State ID#. Grade information will only be available through TRACS.

Exams and Grading (READ THIS CAREFULLY)

Three exams will be given over lecture material during the semester as shown in the above schedule. The final exam WILL be comprehensive.

  • The exams will be multiple choice in format.
  • You should bring a calculator that you know how to use, and two good #2 pencils and erasers to each exam. ScanTron answer sheets will be provided. You may not consult your lap top or hand-held computer or cell phone during an exam!
  • Make-up exams are not provided. If an exam is missed for reasons beyond your control, you should see Dr. Koke ASAP with written documentation of the reasons.
  • NOTE - regardless of your score in lecture and/or lab, you must pass both to pass the course. Passing means earning 60% of the points available.

Grades in this course are based on the percentage of points you earn from the 1000 possible, where 90% = A, 80% = B, 70% = C, 60% = D, < 60 = F. Incomplete ("I") can only be given with prior arrangement on the basis of a physical problem that prevents completion of the course. "W" grades are awarded to students who drop on or before the automatic "W" date. Please note that the automatic "W" date and the last day you can drop are the same day! Distribution of credit is as follows:

  • Exam 1 = 100 points possible
  • Exam 2 = 100 points possible
  • Exam 3 = 100 points possible
  • Final exam = 300 points possible
  • Lab total = 400 points possible.
  • Total possible points = 1000, see above regarding how the letter grade is determined.

Seminar Credit - click here


Labs - begin Feb. 1. See above for schedule. The laboratory portion of this course accounts for 40% of the total credit. Last year's lab exercises are currently posted in the TRACS resource folder for this course. Do NOT print these at this time, as they will likely be modified or replaced before lab starts. NOTE - lab attendance is required, and you cannot earn credit for a lab report on an experiment for which you were not physically present. The following is a draft lab syllabus; the IAs will meet in January to prepare a new one for this coming semester. It will be posted on TRACS when available.

Cell Physiology Lab Syllabus - see TRACS.

Class participation and Preparation:  Please come prepared to lab with the lab instructions printed. Students arriving at lab without the exercise may be counted absent. Quizzes will be given at the beginning of every lab that will cover the previous lab, current lab and lecture material.  Please also keep in mind that participation will be considered when determining your lab write up grade, this will include contributing to your group, clean-up and overall effort.  The purpose of this lab is to inspire creative and collaborative scientific thought, so your participation is greatly encouraged. 

Assignments: There will be 4 or 5 word problems assigned every week.  These will be due the following week at your assigned lab time.  All problem solutions will be submitted electronically though TRACS. 

Attendance: Attendance in lab is mandatory.  Students who need to miss lab and know ahead of time, should make arrangements with their instructor to reschedule for a different time that same week.  Missed labs cannot be made up at any later date.

Academic Dishonesty: Group discussions and collaborative thinking are encouraged to accomplish many aspects of this lab, especially the word problems.  Plagiarism, however, is not.  Please review the university’s policies regarding academic dishonesty. Click here to read The Texas State Honor Code and here Academic dishonesty.


Notice of Intellectual Property Rights: The text and images on this page and pages linked to it are protected by copyright. Lectures and examination questions are also protected by copyright law. They are my own original expression and are properly recorded to bring them under the protection of the U.S. copyright laws. You are authorized to take notes in class and to use the on-line materials I provide, thereby creating derivative works from my lectures and other materials. However, this authorization extends only to making one set of notes or answers for your own personal use and no other use. You may record my lectures for your personal use, but you are not authorized to provide copies, notes or examination questions to anyone else, or to make any commercial use of them without my prior written consent.

This page last updated Wednesday, April 14, 2010. All rights reserved.